Theses

2011

  1. Dennis U. Nielsen. B.Sc. Development of Linkers for Solid-Phase Peptide Synthesis. Supervisor: Troels Skrydstrup (2011).
  2. Joachim Møllesøe Vinther, Part A Ph.D. Resolution Enhancement of Solid-State NMR Spectra by Dipolar-Driven Spin-State Selective Filtering. Supervisor: Niels Chr. Nielsen (2011).
  3. Berit Paaske Jensen, Part A Ph.D. NMR and MRI Studies of Protease Inhibitors in Relation to Cancer and Fibril Binders Associated with Alzheimer’s Disease. Supervisors: Niels Chr. Nielsen and Peter Andreasen (2011).
  4. Anders Bodholt Nielsen, Ph.D. Development of Dipolar Re- and Decoupling Experiments for Biological Solid-State NMR. Supervisor: Niels Chr. Nielsen (2011).
  5. Peter Lüttge Jensen, Ph.D. thesis. Detection of biomarkers for Parkinson’s Disease. Supervised by Jan J. Enghild and Daniel Otzen.
  6. Ebbe Toftgaard Poulsen, M.Sc., Amyloid Aggregation, disease causing or functional benefit. Supervised by Jan J. Enghild and Daniel Otzen.
  7. Antonello Calcutta, Ph.D. Global Protein Folding State Mapping by NMR Spectroscopy: Applications to Membrane Proteins. Supervised by Anders Malmendal and Niels Chr. Nielsen at University of Aarhus, Denmark. (2011)
  8. Natalia Kulminskaya, Part A Ph.D.. Solid-State NMR of Antenna-Protein CsmA. Supervised by Niels Chr. Nielsen at University of Aarhus, Denmark. (2011)
  9. Michael Wulf Risør, Part A Ph.D.. Expressed Protein Ligation of a Proteinase Inhibitor and production of its bioactive C-terminal peptide. Supervised by Niels Chr. Nielsen and Jan J. Enghild at University of Aarhus, Denmark (2011).
  10. Rune Carlsson, B.Sc. Computer-Aided Drug Design. Complement Component 3. Supervised by Birgit Schiøtt (2011)
  11. Anne Laustsen, B. Sc. Complement Component 5. Supervised by Birgit Schiøtt (2011)
  12. Maria Risager Jensen, B.Sc. Integrin Antagonists, Supervised by Birgit Schiøtt and Thomas Vorup-Jensen (2011)
  13. Henriette Elisabeth Autzen, M.Sc. The Human Serotonin Transporter - Ligand Binding and Dynamics. Supervised by Birgit Schiøtt (2011)
  14. Heidi Koldsø Ph.D. Modelling Selected Proteins in Health and Disease – Computational Studies of Monoamine Transporters and Amyloid Proteins. Supervised by Birgit Schiøtt (2011)
  15. Maria Musgaard Ph.D. Transmembrane ATP-dependent Ion Pumps Under the Computational Microscope. Modelling Membrane Interactions, Key Events of the Functional Cycle and Inhibitor Binding. Supervised by Birgit Schiøtt and Lea Thøgersen (2011).
  16. Jesper Sørensen Ph.D. Molecular Modelling of Fats, Cheeses and Diseases. Studies of coarse-grained Lipid Bilayers, the Chymosin-k-casein Complex and Amyloid Fibril Formation by Amylin. Supervised by Birgit Schiøtt (2011).
  17. Claudia H. Hjørringgaard Ph.D. Solid-Phase Peptide Synthesis and Scaffolding of Alamethicin and Analogs. Supervised by Troels Skrydstrup (2011).
  18. Line S. Søbjerg Ph.D. Microbial bio-recovery and regeneration of catalytically active palladium from waste. Supervised by Troels Skrydstrup (2011).
  19. Thomas M. Gøgsig Ph.D. New Discoveries on the Beta-Hydride Elimination. Supervised by Troels Skrydstrup (2011).
  20. Daniel Lupp M.Sc. Process Chemistry at Novartis. Supervised by Troels Skrydtrup (2011).
  21. Maria Ahlmann-Hedegaard B.Sc. Optimization of the Solid Phase Peptide Synthesis of Alamethicin. Supervised by Troels Skrydstrup (2011).
  22. Dennis U. Nielsen B.Sc. Development of Linkers for Solid-Phase Peptide Synthesis. Supervised by Troels Skrydstrup (2011).
  23. Thomas L. Andersen B.Sc. Stereocontrolled synthesis of silanediol oligopeptide mimics as potential HNE-inhibitors. Supervised by Troels Skrydstrup (2011).
  24. Amalie E. Modvig B.Sc. Mescaline, Synthesis of 13C-Labeled Mescaline. Supervised by Troels Skrydstrup (2011).
  25. Karoline Neumann B.Sc. Synthesis of Proxymetacaine via Alkoxycarbonylation. Supervised by Troels Skrydstrup (2011).
  26. Huabing Wang Ph.D. Protein surfactant interactions. Supervised by Daniel Otzen (2011).
  27. Shirin Ghodke Ph.D. Glucagon fibrillation in solution. Supervised by Daniel Otzen (2011).
  28. Francesca Macchi Ph.D. Shaken, not stirred – mechanical perturbation and protein aggregation. Supervised by Daniel Otzen (2011).
  29. Gitte Gregersen B.Sc. Stabilization of Fas4 mutants. Supervised by Daniel Otzen (2011).
  30. Jannik Nedergaard Pedersen B.Sc. Oligomerization of α-synuclein mutants. Supervised by Daniel Otzen (2011).
  31. Rikke Dahl B.Sc. Expression and analysis of FapC mutants. Supervised by Daniel Otzen (2011).
  32. Nanna Rhein Knudsen B.Sc. Molecular mechanism of α-synuclein aggregation inhibition. Supervised by Daniel Otzen (2011).
  33. Signe Gerling B.Sc. Small molecule inhibition of α-synuclein aggregation. Supervised by Daniel Otzen (2011).
  34. Jane Savskov Petersen Ph.D. Extracellular Superoxide Dismutase. Supervised by Jan J. Enghild (2011)
  35. Toke Peter Krogager Hansen Ph.D. Effects of elaidic acid in a HepG2-SF liver cell model. Supervised by Jan J. Enghild (2011).
  36. Ebbe Toftgaard Poulsen B. Sc. Amyloid Aggregation. Supervised by Jan J. Enghild (2011).
  37. Line Rold Thomsen G. Sc. Expression and characterization of a novel Cysteine Proteinase identified from the digestive fluid of the Venus Flytrap. Supervised by Jan J. Enghild (2011).
  38. Maibritt Mardahl B.Sc. Biochemical and functional Characterization of the Interaction between TSC22D4 and KEAP1. Supervised by Jan J. Enghild (2011).
  39. Gitte Julie Møller Christensen B.Sc. Bacteriocin-like inhibitory substances (BLISs) produced by Staphylococcus Species. Supervised by Jan J. Enghild (2011).
  40. Nicholas Balsgart M.Sc. Emerging methods in non-uniform sparse sampling and spectral reconstruction in NMR spectroscopy. Supervised by Thomas Vosegaard (2011).
  41. Østen Skaarup Stillits, B.Sc. Biceller til faststof NMR studier af membranproteiner (2011).

2010

  1. Anna Sigrid Pii Svane, Ph.D Thesis (2010). Liquid-state NMR investigations of peptide conformations and interactions: The peptide hormone glucagon and a uPA inhibiting cyclic peptide. Supervised by Anders Malmendal and Niels Chr. Nielsen at University of Aarhus, Denmark.
  2. Kresten Bertelsen, Ph.D Thesis (2010). Oriented solid-state NMR spectroscopy: Characterization of the static and dynamic conformation-heterogeneity of small membrane bound antibiotic peptides. Supervised by Thomas Vosegaard and Niels Chr. Nielsen at University of Aarhus, Denmark.
  3. Jerzy Dorosz, Ph.D Thesis (2010). Biophysical characterization of peptide interactions with biomimetic membranes. Supervised by Niels Chr. Nielsen and Raz Jelinek at University of Aarhus, Denmark and Ben Gurion University, Israel.
  4. Lise Giehm, Ph.D Thesis (2010) Exploring the fibrillation landscape of α-synuclein. Supervised by Daniel Otzen at University of Aarhus, Denmark.
  5. Kresten Hagen, Masters Thesis (2010). Solid-State NMR on Membrane Proteins. Supervised by Niels Chr. Nielsen at University of Aarhus, Denmark.
  6. Mads Sloth Vinding, Progress Report (2010). Improved Volume Selective Magnetic Resonance Imaging by Optimal Control. Supervised by Niels Chr. Nielsen and Sune Jespersen at University of Aarhus, Denmark.
  7. Karin Doolewerdt. Ph.D Thesis New methods for transition metal catalyzed C-N bond formation. Introduction of nitrogen substituents onto indole scaffolds and amidation of aryls halides and sulfonates. Supervisor: Troels Skrydstrup (2010).
  8. Mette L. H. Mantel. Ph.D. Thesis. Expanding the Scope of Palladium-Catalysed C–C and C–N Bond Formations. Supervisor: Troels Skrydstrup (2010).
  9. Geanna Min. Progress Report. Development of New Transition metal Catalyzed Reactions: Hydrosilylation and Decarbonylations. Supervisor: Troels Skrydstrup (2010).
  10. Daniel Lupp. B.Sc. Thesis Palladium-catalyzed C–N bond formations with heteroaromatic tosylates. Supervisor: Troels Skrydstrup (2010).
  11. Esben P. K. Olsen. M.Sc. Thesis In situ generated palladium hydride complexes in organic synthesis. A mechanistic investigation. Supervisor: Troels Skrydstrup (2010).
  12. Søren Kramer. Progress Report. Access to Indoles, Pyrroles, and Furans via a Highly Regioselective Au(I)-Catalyzed Hydroamination or Hydration of Internal Alkynes. Supervisor: Troels Skrydstrup (2010).
  13. Niels Grønager. M.Sc. Thesis. Conjugate Addition – SNAr Domino Reaction for the Synthesis of Benzo- or Pyridyl-Fused Lactams and Sultams. Supervisor: Troels Skrydstrup (2010).
  14. Andreas Ahlburg. B.Sc. Thesis. Palladium-catalyzed C–C bond formation with heteroaromatic tosylates. Supervisor: Troels Skrydstrup (2010).
  15. Emil F. Holmquist. B.Sc. Thesis. Palladium-catalyzed aminocarbonylation of heteroaromatic tosylates. Supervisor: Troels Skrydstrup (2010).
  16. Signe Korsager. B.Sc. Thesis.. Studies towards the 2-carbon migration of terminal alkenes using a ”Pd–H” catalyst. Supervisor: Troels Skrydstrup (2010
  17. René Madsen. B.Sc. Thesis. The reversible binding of carbon monoxide. Supervisor: Troels Skrydstrup (2010).
  18. Janus Schatz-Jørgensen, B.Sc. Thesis. Functional amyloid in Pseudomonas. Supervisor: Daniel Otzen (2010).
  19. Emil Laust Kristoffersen. B.Sc. Supervisor: Daniel Otzen (2010). B.Sc. Supervisor: Daniel Otzen (2010).
  20. Kirsten Gade. B.Sc. Thesis. Aggregation of Fas4. Supervisor: Daniel Otzen (2010).
  21. Maja Holm. B.Sc. Thesis. Folding of CLIC1. Supervisor: Daniel Otzen (2010).
  22. Mathilde Overmark. B.Sc. Thesis. Kinetically stable proteins in Aspergillus niger. Supervisor: Daniel Otzen (2010).
  23. Anne Overmark. B.Sc. Thesis. Kinetically stable proteins in Aspergillus niger. Supervisor: Daniel Otzen (2010).
  24. Sandra Kragelund. B.Sc.Thesis. Aggregation of α-synuclein monitored by quartz crystal microbalances. Supervisor: Daniel Otzen (2010).
  25. Lone Hansen, M.Sc. Thesis. Trans-fatty acids in food: analysis of the cellular response. Supervised by Jan J. Enghild, University of Aarhus, Denmark.
  26. Malika Karoui. B.Sc. Automatisk peptidsyntese af peptaiboler. Supervisor: Thomas Vosegaard (2010).
  27. Kristoffer Basse, BSc. Thesis. The Reaction Mechanism of the HIV-1 Protease Studied through Quantum Mechanics/Molecular Mechanics (2010). Supervisor Birgit Schiøtt.
  28. Ole Juul Andersen, BSc. Thesis. Determining the Reaction Mechanism of Chymosin (2010). Supervisor Birgit Schiøtt.
  29. Mikkel Vestergaard, BSc. Thesis. Molecular Modeling of Micelles and Bicelles (2010). Supervisor Birgit Schiøtt and Lea Thøgersen.
  30. Ditte Fast Bonde; MSc. Thesis. Computer-Based Lead Discovery - Targeting the C-Terminal Binding Pocket of the Na+,K+-ATPase (2010). Supervisor Birgit Schiøtt.
  31. Thomas Krupsdahl, MSc. Thesis. Incorporating protein flexibility to improve the accuracy of binding mode prediction with comparison of some implementations (2010). Supervisor Birgit Schiøtt and Mette Lie.
  32. Jesper Sørensen, part A -thesis. Modeling of chymosin complexes and amyloid fibrils (2010). Supervisor Birgit Schiøtt.
  33. Farinaz Raziani, B.Sc. Thesis. Identification and cloning of the Na+/H+ exchanger from Bufo marinus kidney tissue: resemblance to mammalian NHE1. Supervisor Torsten Kristensen
  34. Trine Andresen, B.Sc. Thesis. Identifikation af Na+/H+ antiporter (isoform 1) i Perca fluviatilis (Aborre). Supervisor Torsten Kristensen
  35. Stig Hill Christiansen, B.Sc. Thesis. Thrombin Activable Fibrinolysis Inhibitor (TAFI). Investigation of cellular translocation of plasma TAFI (TAFI-1) and the brain specific splice variant (TAFI-2) by In vitro mutagenesis. Supervisor Torsten Kristensen
  36. Annemarie Svane Aavild Poulsen, M.Sc. Thesis. Functional and family based association analysis of the HRH1, IL-2 and SLAMF1 genes in atopic disorders. Supervisor Torsten Kristensen

2009

  1. Anders Bodholt Nielsen, Part A Progress Report (2009), Supervised by N. C. Nielsen. Dipolar recoupling experiments for Biological Solid-State NMR developed using Optimal Control and Analytical Methods.
  2. Antonello Calcutta, Part A Progress Report (2009). Supervised by N. C. Nielsen and A. Malmendal. Studies of Membrane Protein Folding Space by Multivariate NMR Spectroscopy: The KcsA Ion Channel.
  3. Chistoffer Laustsen, M. Sc. Thesis. Supervised by N. C. Nielsen and M. Pedersen. New and Advanced Sequences for 23Na NMR Imaging, Implemented on a 7T System,
  4. Marie Østergaard Pedersen, Ph.D. Thesis. Supervised by N. C. Nielsen. Solution and Solid-State NMR of Insoluble Proteins. Amyloid-b in Alzheimer’s Disease and the Antenna Protein CsmA.
  5. Berit Paaske Jensen (2009). Supervised by T. Vosegaard. Static and Dynamic Disorder of Antimicrobial Peptides in Lipid Membranes.
  6. Casper Høck, B.Sc. Project (2009). Supervised by A. Malmendal. Metabolomic Effects of Prebiotics in a Colon Simulator.
  7. Lone Nielsen, Ph.D. Thesis (2009), Supervised by T. Skrydstrup. Synthesis of Silanediol Containing Peptides
  8. Peter L. Jensen, Ph.D. part A (2009), Supervised by J. J. Enghild and D. E. Otzen. Proteomics Investigation of Human Cerebrospinal Fluids to Identify Biomarkers for Parkinson’s Disease.
  9. Toke Peter Krogager Hansen, Ph.D. part A (2009). Supervised by J. J. Enghild and N. C. Nielsen. Finding Protein Biomarkers for Trans Fatty Acids. A proteomic study of HepG2-SF cells exposed to elaidic acid and oleic acid.
  10. Jane Savskov Petersen, Ph.D. part A (2009). Supervised by J. J. Enghild. Structural and functional studies of Extracellular Superoxide Dismutase (ECSOD).
  11. Johan Frederik Kraft, Ph.D. part A Progress Report (2009), Supervised by B. Schiøtt. Docking and Modelling of Membrane Proteins.
  12. Heidi Koldsø, Ph.D. part A Progress Report (2009), Supervised by B. Schiøtt. Human Monoamine Transporters. Homology Modelling and Ligand Binding.
  13. Maria Musgaard, Ph.D. part A Progress Report (2009), Supervised by B. Schiøtt. Molecular modelling of selected transmembrane transporter proteins – Focusing on the sarcoplasmic reticulum Ca2+ ATPase.
  14. Anders Uhrenholt Christensen, M. Sc. Thesis (2009), Supervised by B. Schiøtt. Molecular Modelling of Chymosin.
  15. Thomas Gøgsig, Ph.D. part A (2009) Supervised by T. Skrydstrup. The 1,2-Migration -A Review
  16. Claudia Hjørringgaard, Ph.D. part A (2009), Supervised by T. Skrydstrup. Synthesis of Templated Multimers of Alamethicin
  17. Katrine Mikkelsen, M. Sc. Thesis (2009), Supervised by T. Skrydstrup. Synthesis of Fibril-binding Organic Compounds and NMR-Studies of their Interactions with beta-Amyloid Fibrils
  18. Rasmus Herlo Jensen, M. Sc. Thesis (2009), Supervised by D. E. Otzen and M. Skovgaard Jensen. Effect of Aβ oligomer on LTP signals in hippocampal brain slices
  19. Katrine Kirkeby Skeby, B. Sc. Thesis (2009), Supervised by B. Schiøtt. Molecular Dosking Study of imipramine and desimipramine in the human Norepinephrine Transporter.
  20. Henriette Elisabeth Nielsen, B. Sc. Thesis (2009), Supervised by B. Schiøtt. Binding of Cocain in hDAT and hSERT. A Molecular Modelling Study.
  21. Camilla Lund Nikolajsen, B.Sc. Thesis (2009), Supervised by J. J. Enghild. A Mass Spectrometry-based Approach for Identification of Tissue Transglutaminase Substrates.
  22. Heidi K. Frahm, B. Sc. Thesis (2009), Supervised by T. Skrydstrup. Syntese af cyclodextrin peptid konjugater
  23. Mia N. Burhardt, B. Sc. Thesis (2009) Supervised by T. Skrydstrup. Synthesis of a trifluorinated (19)FBAY94-9172 analog
  24. Stig Friis, B. Sc. Thesis (2009), Supervised by T. Skrydstrup. Synthesis of gamma-functionalised silanediol amino acid mimics
  25. Rasmus Mose, B. Sc. Thesis (2009), Supervised by T. Skrydstrup. Syntese af aminosyreranaloger indeholdende et silandiol-segment
  26. Trine Poulsen, B. Sc. Thesis (2009), Supervised by T. Skrydstrup. Asymmetrisk syntese af a-methylserin via Schölkopfs dihydropyrazin-analog.
  27. Klaus Bjerglund, B. Sc. Thesis (2009), Supervised by T. Skrydstrup. A Study in the Synthesis of a Silicon-Containing Heterocycle.
  28. Christian Gylstorff, B.Sc. B.Sc. Thesis (2009), Supervised by D. Otzen. Kinetic stability of T. lanuginosus lipase.
  29. Thomas Bjerring. B.Sc. Thesis (2009), Supervised by D. Otzen. Interactions between lipase and bile salts.
  30. Marcel Stenvang, B.Sc. Thesis (2009), Supervised by D. Otzen. Effect of nanoparticles on protein aggregation.
  31. Steffen Vestergaard B.Sc. Thesis (2009), Supervised by D. Otzen and K.Gothelf. Tailoring aggregation by DNA origami.

2008

  1. K. L. Christensen, M.Sc. Thesis, Aarhus (2008). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Application of SmI2 for the Synthesis of Peptide Mimics.
  2. C. B. Christensen, Ph.D. Thesis, Aalborg (2008) Supervised by Daniel E. Otzen, Aalborg University, Denmark. Glucagon fibrillation — kinetics and structural polymorphism.
  3. J. Møjbæk, B.Sc. thesis, Aarhus (2008). Supervised by Birgit Schiøtt, University of Aarhus, Denmark. Comparison of MVD and Glide using the Astec protein-ligand set.
  4. Marie Østergaard Pedersen part A progress report, Aarhus (2008). Supervised by Niels Chr. Nielsen and Jens Dittmer, University of Aarhus. NMR structure of a small antenna protein, CsmA, from Chloribium Tepidum & initial studies of amyloid-b fibril forming polypeptide involved in Alzheimer's disease.
  5. Anna Sigrid Pi Svane, part A progress report, Aarhus (2008). Supervised by Niels Chr. Nielsen, Anders Malmendal and Jens Dittmer, University of Aarhus. Studies of amyloid fibril formation and peptide-membrane interactions using liquid-state NMR spectroscopy.
  6. Kresten Bertelsen, part A progress report, Aarhus (2008). Supervised by Niels Chr. Nielsen and Thomas Vosegaard, University of Aarhus. New methods for studying peptides in liquid bilayers with solid-state NMR spectroscopy.
  7. Jerzy Dorosz, part A progress report, Aarhus (2008). Supervised by Niels Chr. Nielsen, University of Aarhus and Raz Jelinek Ben Gurion University. Molecular mechanism of amyloid and antimicrobial peptide interaction with lipid membranes investigated using diverse biophysical methods.
  8. Christoffer Laustsen, project report, Aarhus (2008). Supervised by Niels Chr. Nielsen, Universuty of Aarhus. Magnetically aligned bicelles.
  9. Mads Sloth Vinding, M.Sc. report, Aarhus (2008). Supervised by Niels Chr. Nierlsen and Peter Vestergaard Poulsen, University of Aarhus. Optimal control MRI of the chronic stress induced neuroplasticity of the human Hippocampus – a feasibility study. 
  10. M. Mantel, M.Sc. Thesis, Aarhus (2008). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Synthesis of the Fibril Binding Compound FSB & Development of an Atom-Efficient Ene-yne Coupling
  11. L. Thim, M.Sc. Thesis, Aarhus (2008). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Cyclisation of N-Acyl Oxazolidinones Promoted by Samarium Diiodide & Chiral Glucosamine-Based Ligands for Asymmetric Palladium Catalysed Allylic Alkylations
  12. K. Dooleweerdt, M.Sc. Thesis, Aarhus (2008). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Ynamides – From Their Synthesis Towards Their Applications in Indole Synthesis
  13. J. Grouleff, B.Sc. Thesis, Aarhus (2008). Supervised by T. Skrydstrup, University of Aarhus, Denmark, An Investigation of Heteroaromatic Tosylates as Electrophiles in the Heck Reaction
  14. D. F. Jensen, B.Sc. Thesis, Aarhus (2008). Supervised by T. Skrydstrup, University of Aarhus, Denmark, Oxidative Degradation of Collagen Model Peptides
  15. J. Sørensen, M.Sc. Thesis, , Aarhus (2008). Supervised by B. Schiøtt, University of Aarhus. Computational Studies of Fibril-forming Proteins
  16. A. U. Christensen, B.Sc. Thesis, Aarhus (2008). Supervised by B. Schiøtt, University of Aarhus. The flip-flop mechanism of the hERα LBD
  17. S. R. Villadsen B.Sc. Thesis, Aarhus (2008). Supervised by B. Schiøtt, University of Aarhus. Molekylær modellering af paroxetins binding I den humane serotonin transporter
  18. L. V. Jespersen, B.Sc. Thesis, Aarhus (2008). Supervised by B. Schiøtt, University of Aarhus. Computational Studies of Transthyretin – Investigating the Fibril-forming Propensity
  19. L. Celik, PhD Thesis, Aarhus (2008). Supervised by B. Schiøtt, University of Aarhus. Protein, Structure Function and Dynamics Molecular mechanical methods applied to the estrogen receptor α and the serotonin and leucine transporters
  20. J.C.B. Madsen, B.Sc. Thesis, Aarhus (2008). Supervised by S. Birkelund and T. Kristensen, University of Aarhus. The Role of Tryptophan in Chlamydial Infections
  21. L. Munk Rydtoft, M. Sc. Thesis, Aarhus (2008). Supervised by N. C. Nielsen and P. Vestergaard-Poulsen. Ultra-high-field MRI studies of an Alzheimer’s Disease mouse model.
  22. Esben Fisker, supervised by B. Schiøtt: Glide and MVD: A comparison of HTVS Capabilities, 2008.
  23. Thomas Krupsdahl, supervised by B. Schiøtt: Comparison of flexible Docking in Glide and MVD, 2008.
  24. Tri H. V. Huynh, M.Sc. Thesis, Aarhus (2008). Supervised by T. Skrydstrup, Aarhus University, Denmark.  Synthesis of Fibril Binding Compounds.

2007

  1. Søren Roi Midtgaard, B. Sc. Report (2007). Supervised by Jens Dittmer and Niels Chr. Nielsen, University of Aarhus. Studier af tidlige stadier af glucagon fibrillering. Syntese og væske fase NMR analyse af et glucagon decapeptid
  2. Klaus Tangaard Nielsen, M.Sc. Thesis, Aarhus (2007). Supervised by Niels Chr. Nielsen, University of Aarhus. Characterization of calcium phosphate nanoclusters and Pd-based artificial enzymes by 31P solid-state NMR spectroscopy
  3. Ronnie Overgaard Pedersen, Bachelor (2007). Supervised by Niels Chr. Nielsen and Morten Bjerring at University of Aarhus, Denmark. Solid-state NMR analysis of a small fibrillating peptide.
  4. Marie Louise Riber-Hansen, Bachelor (2007). Supervised by Anders Malmendal and Niels Chr. Nielsen at University of Aarhus, Denmark. Collagen degradation measured by NMR spectroscopy.
  5. Cindie. T. Kehlet, Ph.D. Thesis (2007). Supervised by Niels Chr. Nielsen, University of Aarhus, Denmark. Design of NMR experiments for biological applications using optimal control theory.
  6. Jarl Underhaug, Ph.D. Thesis (2007). Supervised by Niels Chr. Nielsen, University of Aarhus, Denmark. A structural basis for the understanding of the mechanisms of corneal dystrophies, and other fibrillognic or membrane-associating systems using liquid-state NMR.
  7. S. Nielsen, MSc Thesis, Aarhus (2007). Supervised by B. Schiøtt and Mikael Bols, University of Aarhus, Denmark. Studie af bindingen mellem aryl-glykosider og α-cyklodextrin cyanohydrin
  8. M. Laursen, BSc Thesis, Aarhus (2007), Supervised by B. Schiøtt, University of Aarhus, Denmark. Binding of 1-Azafagomine in b-glucosidase
  9. K. L. Jensen, B.Sc. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. En undersøgelse af et ikke-aktiveret fosfat som elektrofil i Sonogashira reaktionen & Suzuki-Miyaura katalyserede vinyleringsreaktioner
  10. J. L. H. Madsen, B.Sc. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Syntese af ketomethylen peptid isosterer ved SmI2 medieret acyl-lignende radikale addition
  11. J. B. Faber, B.Sc. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Siliciumdioler som peptidanaloger–syntese af umiddelbare precursors
  12. S. Kramer, B.Sc. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. SmI2-promoverede koblinger af N-acylhydrazoner med n-butylakrylat og t-butyl akrylamid
  13. A. Ø. Nielsen, Bachelor, B.Sc. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Synthesis and Investigation of a Monosaccharide-based Aminophophine Ligand in Asymmetric Allylic Alkylation
  14. R. Taaning, M.Sc. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. One Step Ahead in the Race Against Resistant Bacteria
  15. T. Mittag, M.Sc. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Development of a New C-Peptide Ligation Methodology: Application to the Fibrillating Peptide NFGAIL
  16. L. Nielsen, M.Sc. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Synthesis of Silanediol Peptide Mimics
  17. M.-L. Olesen, M.Sc. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. New Synthetic Methodology to Oligochitosans
  18. L. N. Feldborg, M.Sc. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Reductive Enolisation of a-Thioglycolates
  19. A. L. Hansen, Ph.D. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Pd(0) & Ni(0) Catalyzed Transformations–Expanding the Scope of Substrates and Electrophiles
  20. S. A. Johannesen, Ph.D. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Application of Carbohydrate Derivatives in Asymmetric Synthesis and as Ligands in Metal Ion Complexes
  21. S. G. Hansen, Ph.D. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Functionalized Thioglucosaminides
  22. C. M. Jensen, Ph.D. Thesis, Aarhus (2007). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Uncovering the Potential of SmI2 in the Formation of a-substitituted g-Keto Esters and Amide.
  23. Rajiv Vaid Basaiawmoit , Ph.D. Thesis, Aalborg (2007). Supervised by D. Otzen, Aalborg University, Denmark. Molecular Mechanisms of Corneal Dystrophies.
  24. Ditte Maria Simondson Lundvig, Ph.D. Thesis, Aarhus (2007). Co-supervised by D. Otzen, Aalborg University, Denmark. Investigation of the normal function of the brain protein p25a and its relation to demyelinating disorders.
  25. Mette Alstrup Lie, Ph.D. Thesis, Aarhus (2007), Supervised by Birgit Schiøtt, Univeristy of Aarhus, Denmark. Molecular Modeling of Biochemical Binding and Mechanisms; Exemplified from Enzyme, Protein and Organocatalysis.
  26. Peter Lüttge Jensen. M.Sc. Thesis, Aalborg (2007). Supervised by D. Otzen, Aalborg University, Denmark. Detection and characterization of amyloid in mycolata species
  27. Anette Yde. M.Sc. Thesis, Aalborg (2007). Supervised by D. Otzen, Aalborg University, Denmark.  Degradation of bacterial amyloid.
  28. Line Aa. H. Thomsen. M.Sc. Thesis, Aalborg (2007). Supervised by D. Otzen, Aalborg University, Denmark. Acylation of the antimicrobial peptide Novicidin
  29. Lars Kjær. M.Sc. Thesis, Aalborg (2007). Supervised by D. Otzen, Aalborg University, Denmark.  A biophysical study of the interaction of a-synuclein with phospholipid membranes.
  30. Jonas H. Hansen. M.Sc. Thesis, Aalborg (2007). Supervised by D. Otzen, Aalborg University, Denmark.  Limited proteolysis as a tool to probe protein conformation in surfactants.
  31. Marie Thomsen. M.Sc. Thesis, Aalborg (2007). Supervised by D. Otzen, Aalborg University, Denmark. A biophysical investigation of a conformational disease: “Antithrombin III Aalborg.
  32. Anders Dahl Knudsen. M.Sc. Thesis, Aalborg (2007). Supervised by D. Otzen, Aalborg University, Denmark.  Expression proteomic analysis of cell-lines expressing proteins implicated in Parkinson’s Disease.
  33. Kristian Sanggaard, Ph.D. Thesis, Aarhus (2007). Supervised by Jan J. Enghild and T. Kristensen. University of Aarhus, Denmark. The extracellular matrix. Structure, function and interactions of bikunin proteins and TSG-6.
  34. K. Lorentzen M. Sc. Thesis Aarhus (2007). Supervised by Jan J. Enghild. University of Aarhus, Denmark. The extracellular matrix, Structure, Function and Interactions of TSG-6 and Bikunin Protein Family
  35. A. Møller, M. Sc. Thesis Aarhus (2007). Supervised by Jan J. Enghild. University of Aarhus, Denmark. Trans fatty acids, Effects of elaidic acid on mRNA and protein expression in HepG2 cells.
  36. Lone Hansen, Bachelor thesis Aarhus (2007). Supervised by Jan J. Enghild. University of Aarhus, Denmark. Bikunin Proteins The Purification and Characterisation of Hen Bikunin Proteins.
  37. Anna Dippel Lande, Bachelor thesis, Aarhus (2007). Supervised by Jan J. Enghild. University of Aarhus, Denmark. Protein Interactions Between TGFBIp and Corneal or Plasma Proteins.
  38. Line Rold Thomsen, Bachelor thesis, Aarhus (2007). Supervised by Jan J. Enghild. University of Aarhus, Denmark. Comparison of human and bovine ECSOD disulfide bridge pattern.
  39. Martin Laustsen Jensen, Bachelor thesis, Aarhus (2007). Supervised by Jan J. Enghild and Tobias Wang. University of Aarhus, Denmark. Fordøjelsessystemet i kongepython (Python regius) med vægt på proteaser.
  40. Anne-Novera Larsen, Bachelor thesis, Aarhus (2007). Supervised by Jan J. Enghild and Tobias Wang. University of Aarhus, Denmark. Digestive system of Python regius with main focus on proteases
  41. Dennis Christensen, Bachelor thesis, Aarhus (2007). Supervised by Birgit Schiøtt and Lea Thøgersen, University of Aarhus Denmark. Alamethicins kanalegenskaber.
  42. Steffen Nygaard Thomsen, Bachelor Thesis, Aarhus (2007). Supervised by Torsten Kristensen and Tobias Wang, University of Aarhus, Denmark. Discovery and Cloning of the Reptilian Na+/H+ Transporter (Isoform 1)
  43. Rikke Wehner Rasmussen, Bachelor Thesis, Aarhus (2007). Supervised by Torsten Kristensen, University of Aarhus, Denmark, and Dang Duong Bang, Technical University of Denmark. Cytolethal Distending Toxin B Gene of Campylobacter upsaliensis Isolated from Human and Dog.
  44. Marie Kragballe, Bachelor Thesis, Aarhus (2007). Supervised by Torsten Kristensen and Ove Wiborg, University of Aarhus, Denmark. Functional Regulation of the Serotonin Transporter by Cannabinoid Receptor Interacting Protein, CRIP1a
  45. Brita Kocaman, M.Sc. Thesis, Aarhus (2007). Supervised by Torsten Kristensen, University of Aarhus, Denmark. Cloning and Characterization of two Cysteine Protease cDNAs in the Carnivorous Venus flytrap Plant, and Developing HEK293 Cell Lines Stably Expressing Venus flytrap Cysteine Proteases

2006

  1. J. Underhaug, Progress Report (2006). Supervised by Niels Chr. Nielsen and Anders Malmendal at University of Aarhus, Denmark. Structure of Membrane Peptides and Side-Chain Dynamics of Proteins by Liquid-State NMR.
  2. Peter Würtz, M. Sc. Thesis, Aarhus (2006). Supervised by Niels Chr. Nielsen. Pulse sequence design for biomolecular NMR spectroscopy
  3. Kasper Jahn, B.Sc. Thesis, Aarhus (2006). Supervised by Jens Dittmer and Niels Chr. Nielsen, University of Aarhus. Væskefase NMR undersøgelser af glucagon.
  4. Morten Kjærulf Sørensen, B.Sc. Thesis, Aarhus (2006). Supervised by Thomas Vosegaard and Niels Chr. Nielsen, University of Aarhus. Solid phase peptide synthesis and solid-state NMR characterization of a fibrillating prion peptide.
  5. Lasse Arnt Straasø, B. Sc. Report, Aarhus (2006). Supervised by Niels Chr. Nielsen, University of Aarhus. Approksimativ formulering af “exact effective Hamiltonian” teori som alternative til “average Hamiltonian” teori ved udvikling af NMR eksperimenter
  6. Anders Bodholt Nielsen, B. Sc. Report (2006). Supervised by Niels Chr. Nielsen, University of Aarhus. Symmetribaserede rekoblingssekvenser til biologisk faststof NMR udviklet med optimal control teori
  7. Julie Søgaard Nielsen, Project Report (2006). Supervised by Morten Bjerring and Niels Chr. Nielsen, University of Aarhus. Solid-state NMR study of photovoltaic polymers stabilized by hydrogen bonded networks.
  8. A.-M. Hansen, MSc Thesis, Aarhus (2006). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Development of a New Carbon-Carbon Bond Forming Reaction Promoted by Samarium Diiodide
  9. S. S. Hansen, MSc Thesis, Aarhus (2006). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Studies Directed to Understanding the Conformation of Chitosan
  10. Rune Birkler, MSc Thesis, Aarhus (2006). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Synthesis of Ligands for Improved Drug Delivery Molecules in Gene Therapy
  11. Jakob Karaffa, MSc Thesis, Aarhus (2006). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Uncovering the Potential of SmI2 in the Formation of alpha-substitituted gamma-Keto Esters and Amides
  12. Rune Birkler, BSc Thesis, Aarhus (2006). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Synthesis of Peptides for Drug Delivery
  13. Marie Louise Olesen, BSc Thesis, Aarhus (2006). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Syntese af chitosan oligosaccharider
  14. Thomas Gøgsig, BSc Thesis, Aarhus (2006). Supervised by T. Skrydstrup, University of Aarhus, Denmark. En undersøgelse af 1,2-Pd migration i Heck koblingen og Vinyl phosphater i metalkatalyserede krydskoblinger
  15. Claudia U. Hjørringgaard, BSc Thesis, Aarhus (2006). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Syntese af potentielle beta-amyloid-bindende molekyler
  16. Jane S. Petersen, Bachelor, BSc Thesis, Aarhus (2006). Supervised by T. Skrydstrup, University of Aarhus, Denmark. Syntese af EF-Tu inhibitorer
  17. L. Celik, part A report of PhD, Aarhus (2006). Supervised by B. Schiøtt, University of Aarhus, Denmark. Molecular Modeling of Selected Poteins
  18. J. D. D: Lund, MSc Thesis, Aarhus (2006). Supervised by B. Schiøtt, University of Aarhus, Denmark. Molecular Modeling of EF-Tu.
  19. S. S. Hansen, MSc Thesis, Aarhus (2006). Supervised by B. Schiøtt and Troels Skrydstrup, University of Aarhus, Denmark. Studies Directed to Understanding the Conformation of Chitosan
  20. H. Koldsø, BSc Thesis, Aarhus (2006), Supervised by B. Schiøtt, University of Aarhus, Denmark. Structural Insight into Citalopram Binding in the human Serotonin Transporter. A Molecular Modeling Study.
  21. M. Musgaard, BSc Thesis, Aarhus (2006), Supervised by B. Schiøtt, University of Aarhus, Denmark. Insights into Binding of Imipramine and Analogues to the Human Serotonin Transporter - An Induced Fit Docking Study
  22. L. Ramsgaard, MSc Thesis, Aarhus (2006). Supervised by T. Kristensen and J.J. Enghild. Characterization of the proteolytic cleavage of human extracellular superoxide dismutase and intra- and extracellular presence of  active- and inactive extracellular superoxide dismutase.
  23. E. Toftegaard Poulsen, BSc Thesis, Cleavage of Prolyl bonds in collagen peptides analogues by reactive oxygen species. 01-08 (2006)
  24. K. Pedersen. BSc Thesis, Characterization of alpha-adregernic receptors (05-05 (2006)
  25. Jesper S. Pedersen, Ph.D. Thesis, Aalborg (2006). Supervised by Daniel Otzen, Aalborg University. In vitro studies of amyloid-like protein fibrils using glucagons as model system
  26. Stine Kvist Knudsen, M.Sc. Thesis, Aalborg (2006). Supervised by Daniel Otzen, Aalborg University. Effects of glycosylation on biophysical and flocculation of the extra cellular domain of Ag43
  27. Mette Møller Nielsen, M.Sc. Thesis, Aalborg (2006). Supervised by Daniel Otzen, Aalborg University. Stability of b-sheet proteins against unfolding in detergent.
  28. Morten Simonsen Dueholm, M.Sc. Thesis, Aalborg (2006). Supervised by Daniel Otzen, Aalborg University. Purification and characterization of bacterial amyloid fibrils.
  29. Line Koustrup Engelbrecht, M.Sc. Thesis, Aalborg (2006). Supervised by Daniel Otzen, Aalborg University. Inhibition of protein aggregation by green tea components.
  30. Kristina Pedersen, Bachelor Thesis, Aarhus (2006). Supervised by Torsten Kristensen, University of Aarhus, Denmark. Alpha-1-adrenoceptors.

2005

  1. M. Bjerring, Ph.D. Thesis (2005). Supervised by Niels Chr. Nielsen at University of Aarhus, Denmark. Development of Dipolar Recoupling Methods and Applications in Biological Solid-State NMR.
  2. A.C. Sivertsen, Ph.D Thesis (2005). Supervised by Niels Chr. Nielsen and Jack Schaefer at University of Aarhus, Denmark and Washington University, St. Louis. Aspects for Biological Solid-State NMR: From Protein Expression to Design of New Pulse Elements.
  3. C. Kehlet, Progress Report (2005). Supervised by Niels Chr. Nielsen and Steffen Glaser at University of Aarhus, Denmark and Technische Universität, Münich. Optimal Control Theory for the Design of NMR Experiments for Biological Applications.
  4. C.C. Yde, Masters Thesis (2005). Supervised by Niels Chr. Nielsen, Thomas Vosegaard, and Anders Malmendal at University of Aarhus, Denmark. Characterization of pardaxin in biological membrane-mimicking environments by CD, ATR-FTIR, solution and solid-state NMR spectroscopy.
  5. A.S.P. Svane, Bachelor Report (2005). Supervised by Niels Chr. Nielsen, Thomas Vosegaard at University of Aarhus, Denmark. A liquid-state NMR study of the fibrillation of a conjugated bis peptide from prion octarepeat.
  6. K. Berthelsen, Bachelor Report (2005). Supervised by Niels Chr. Nielsen, Thomas Vosegaard, and Jens Dittmer at University of Aarhus, Denmark. Alamethicin.
  7. K. Nielsen, Project Report (2005). Supervised by Niels Chr. Nielsen at University of Aarhus, Denmark. Calcium phosphate nanoclusters.
  8. Lars Ottesen, Masters Thesis (2005). Supervised by Troels Skrydstrup at University of Aarhus and Roger Olsson, Acadia Pharmaceuticals, Denmark. Cross-coupling reactions with imidoyl chlorides.
  9. J. Karaffa, Bachelor Report (2005). Supervised by Troels Skrydstrup at University of Aarhus, Denmark. Carbon-carbon bond formation via acyl-like radical additions.
  10. R. Taaning, Bachelor Report (2005). Supervised by Troels Skrydstrup at University of Aarhus, Denmark. New Carbon-carbon bond forming reactions using samarium diiodide.
  11. L. Thim, Bachelor Report (2005). Supervised by Troels Skrydstrup at University of Aarhus, Denmark. Synthesis of mannose modified chitosans.
  12. K. Christensen, Bachelor Report (2005). Supervised by Troels Skrydstrup at University of Aarhus, Denmark. New methods for the introduction of sidechains onto small peptides.
  13. J. E. Mogensen, Ph.D. thesis (2005). Supervised by Daniel Otzen at University of Aalborg. Studies on protein-detergent interactions using the autotransporter AIDA from E. coli and the lipase from T. lanuginosus as model proteins.
  14. L. Giehm, M.Sc. thesis (2005). Supervised by Daniel Otzen at University of Aalborg. Biophysical analysis of a concatemer of the Alzheimer beta peptide.
  15. B. Vad, M.Sc. thesis (2005). Supervised by Daniel Otzen at University of Aalborg. Investigating structural features of the transmembrane proteisn DsbB and AIDA-I by the use of crystallography and Atomic Force Microscopy.
  16. S. Mølgaard, M.Sc. thesis (2005). Supervised by Daniel Otzen at University of Aalborg. Association of transmembrane protein fragments.
  17. M. Davidsen, M.Sc. thesis (2005). Supervised by Daniel Otzen at University of Aalborg. Influence of lipids on glucagon fibrillation.
  18. C. Christensen, M.Sc. thesis (2005). Supervised by Daniel Otzen at University of Aalborg. Dendrimers and protein aggregation.
  19. K. Andersen, M.Sc. thesis (2005). Supervised by Daniel Otzen at University of Aalborg. Mechanism of unfolding of OmpA in lipid bilayers.
  20. Trine Christensen, M. Sc. thesis Aarhus (2005). Supervised by Jan J. Enghild at University of Aarhus. Purification of human thrombin activatable fibrinolysis inhibitor.
  21. Anne Due, M. Sc. thesis Aarhus (2005). Supervised by Jan J. Enghild at University of Aarhus. Structural and functional aspects of human and rabbit extracellular superoxide dismutase.
  22. L. Grubach, bachelor thesis, Aarhus (2005). Supervised by Jan J. Enghild at University of Aarhus. Characterization of bovine EC-SOD.
  23. A. Møller, bachelor thesis Aarhus (2005). Supervised by Jan J. Enghild at University of Aarhus. Extracellular superoxide dismutase types in blood and urine.
  24. T. Østergaard, M. Sc. thesis Arhus (2005). Supervised by Jan J. Enghild at University of Aarhus. Studies on the Human and Porcine Cornea -Transparency & Proteomics.
  25. J. D. D. Lund, B. Sc. Thesis Aarhus (2005). Supervised by Birgit Schiøtt at University of Aarhus. The Estrogen Receptor
  26. J. Sørensen, BSc Thesis Aarhus (2005). Supervised by Birgit Schiøtt at University of Aarhus. Theoretical Study of short strong hydrogen bonds.
  27. S. Christensen, Bachelor Thesis, Aarhus (2005). Supervised by Torsten Kristensen and Morten Nielsen, University of Aarhus, Denmark. Sortilin, Karakterisering af en ny Receptor.